1NPW

Crystal structure of HIV protease complexed with LGZ479

Structural Biology Knowledgebase: 1NPW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.188

Literature

Macromolecules
Sequence Display for 1NPW

Classification: HYDROLASE

Total Structure Weight: 22233.42

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: HIV-1 PROTEASE
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LGZ
Query on LGZ

A CARBAMIC ACID 1-{5-BENZYL-5-[2-HYDROXY-4- PHENYL-3-(TETRAHYDRO-FURAN- 3-YLOXYCARBONYLAMINO)- BUTYL]-4-OXO-4,5-DIHYDRO-1H-PYRROL-3-YL}- INDAN-2-YL ESTER
LGZ479 INHIBITOR (Synonym)
C36 H39 N3 O7
LIIUTXFOEDWJEK-HQJNJJHVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LGZ N/A in BindingDB
IC50: 2 nM  BindingMOAD
IC50: 2.0 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.188
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.60 α = 90.00
b = 87.40 β = 90.00
c = 46.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-20
  • Released Date: 2003-02-04
  • Deposition author(s): Smith 3rd, A.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4