1NMP

Structural genomics, ybgI protein, unknown function

Structural Biology Knowledgebase: 1NMP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1NMP

Classification: structural genomics unknown function

Total Structure Weight: 161785.00

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein ybgI A, B, C..., D, E, FA, B, C, D, E, F 247 Escherichia coli Gene Name(s): ybgI b0710 JW0700
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.212
  • Space Group: P 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 156.73 α = 90.00
b = 156.73 β = 90.00
c = 57.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-10
  • Released Date: 2004-01-20
  • Deposition author(s): Ladner, J.E., Obmolova, G., Teplyakov, A., Khil, P.P., Camerini-Otero, R.D., Gilliland, G.L., Structure 2 Function Project (S2F)

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4