1NJN

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Structural Biology Knowledgebase: 1NJN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.284

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NJN

Classification: RIBOSOME

Total Structure Weight: 933767.63

Macromolecule Entities
Molecule Chains Length Organism Details
23S ribosomal RNA 0 2880 Deinococcus radiodurans

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPS
Query on SPS

0 SPARSOMYCIN
C13 H19 N3 O5 S2
XKLZIVIOZDNKEQ-CLQLPEFOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.284
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.10 α = 90.00
b = 409.90 β = 90.00
c = 696.30 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-01-02
  • Released Date: 2003-02-11
  • Deposition author(s): Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4