1NHZ

Crystal Structure of the Antagonist Form of Glucocorticoid Receptor

Structural Biology Knowledgebase: 1NHZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1NHZ

Classification: Hormone receptor

Total Structure Weight: 32939.43

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOCORTICOID RECEPTOR A 280 Homo sapiens Fragment: residue 500-777, hinge and steroid binding domains
Mutation: N517D, F602S, C638D
Gene Name(s): NR3C1 Gene View GRL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
486
Query on 486

A 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13- METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17- DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE
RU-486, MIFEPRISTONE (Synonym)
C29 H35 N O2
VKHAHZOOUSRJNA-GCNJZUOMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEZ
Query on HEZ

A HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
486 EC50: 0.6 - 872 nM (98) BindingDB
IC50: 0.008 - 11 nM (92 - 98) BindingDB
Ki: 0.1 - 169 nM (98) BindingDB

N/A in BindingMoad
Ki: 840 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.204
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.86 α = 90.00
b = 109.76 β = 90.00
c = 39.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-20
  • Released Date: 2003-05-06
  • Deposition author(s): Kauppi, B., Jakob, C., Farnegardh, M., Yang, J., Ahola, H., Alarcon, M., Calles, K., Engstrom, O., Harlan, J., Muchmore, S., Ramqvist, A.-K., Thorell, S., Ohman, L., Greer, J., Gustafsson, J.-A., Carlstedt-Duke, J., Carlquist, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values