1NFT

OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM

Structural Biology Knowledgebase: 1NFT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1NFT

Classification: TRANSPORT PROTEIN

Total Structure Weight: 36784.46

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (OVOTRANSFERRIN) A 329 Gallus gallus Fragment: N-TERMINAL LOBE
Mutation: I12V, A64V, L133I
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NTA
Query on NTA

A NITRILOTRIACETIC ACID
C6 H9 N O6
MGFYIUFZLHCRTH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.189
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 125.29 α = 90.00
b = 125.29 β = 90.00
c = 87.53 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-07
  • Released Date: 1999-01-13
  • Deposition author(s): Mizutani, K., Yamashita, H., Kurokawa, H., Mikami, B., Hirose, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values