1NDT

NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS

Structural Biology Knowledgebase: 1NDT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 1NDT

Classification: OXIDOREDUCTASE

Total Structure Weight: 36208.48

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (NITRITE REDUCTASE) A 336 Achromobacter xylosoxidans EC#: 1.7.2.1 IUBMB
Details: COPPER, CHLORIDE
Gene Name(s): nir nirK ERS451415_02178
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.167
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 81.24 α = 90.00
b = 81.24 β = 90.00
c = 100.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-28
  • Released Date: 1998-11-04
  • Deposition author(s): Dodd, F.E., Vanbeeumen, J., Eady, R.R., Hasnain, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values