1ND2

The structure of Rhinovirus 16

Structural Biology Knowledgebase: 1ND2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1ND2

Classification: Virus [ VIPERdb ]

Total Structure Weight: 95702.99

Macromolecule Entities
Molecule Chains Length Organism Details
coat protein VP1 A 285 Rhinovirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
coat protein VP2 B 261 Rhinovirus a Gene Name(s):
coat protein VP3 C 238 Rhinovirus a Gene Name(s):
coat protein VP4 D 68 Rhinovirus a Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYR
Query on MYR

A, D MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.202
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 360.37 α = 90.00
b = 343.63 β = 90.00
c = 332.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-06
  • Released Date: 2003-12-16
  • Deposition author(s): Zhang, Y., Simpson, A.A., Bator, C.M., Chakravarty, S., Pevear, D.C., Skochko, G.A., Tull, T.M., Diana, G., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4