1NCR

The structure of Rhinovirus 16 when complexed with pleconaril, an antiviral compound

Structural Biology Knowledgebase: 1NCR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 1NCR

Classification: Virus [ VIPERdb ]

Total Structure Weight: 95855.98

Macromolecule Entities
Molecule Chains Length Organism Details
coat protein VP1 A 285 Rhinovirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
coat protein VP2 B 261 Rhinovirus a Gene Name(s):
coat protein VP3 C 238 Rhinovirus a Gene Name(s):
coat protein VP4 D 68 Rhinovirus a Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
W11
Query on W11

A 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5- YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE
WIN63843 (Synonym)
C18 H18 F3 N3 O3
KQOXLKOJHVFTRN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MYR
Query on MYR

D MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.243
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 359.49 α = 90.00
b = 343.66 β = 90.00
c = 332.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-05
  • Released Date: 2003-12-16
  • Deposition author(s): Zhang, Y., Simpson, A.A., Bator, C.M., Chakravarty, S., Pevear, D.C., Skochko, G.A., Tull, T.M., Diana, G., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4