1NBX

Streptavidin Mutant Y43A at 1.70A Resolution

Structural Biology Knowledgebase: 1NBX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1NBX

Classification: BIOTIN-BINDING PROTEIN

Total Structure Weight: 52875.64

Macromolecule Entities
Molecule Chains Length Organism Details
Streptavidin A, B, C, D 127 Streptomyces avidinii Fragment: core streptavidin, residues 13-139
Mutation: Y43A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.30 α = 90.00
b = 87.70 β = 98.90
c = 46.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-04
  • Released Date: 2003-09-02
  • Deposition author(s): Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4