1NBF

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1NBF

Classification: HYDROLASE

Total Structure Weight: 140134.69

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin carboxyl-terminal hydrolase 7 A, B, E 353 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: hausp core domain
Gene Name(s): USP7 Gene View HAUSP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin aldehyde C, D 76 Homo sapiens Mutation: G376X
Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
GLZ
Query on GLZ
C, D L-PEPTIDE LINKING C2 H5 N O GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.218
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 99.73 α = 90.00
b = 101.17 β = 90.00
c = 141.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-02
  • Released Date: 2003-01-07
  • Deposition author(s): Hu, M., Li, P., Li, M., Li, W., Yao, T., Wu, J.-W., Gu, W., Cohen, R.E., Shi, Y.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance