1NAA

Cellobiose Dehydrogenase Flavoprotein Fragment in Complex with Cellobionolactam

Structural Biology Knowledgebase: 1NAA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.146

Literature

Macromolecules
Sequence Display for 1NAA

Classification: OXIDOREDUCTASE

Total Structure Weight: 118479.16

Macromolecule Entities
Molecule Chains Length Organism Details
Cellobiose dehydrogenase A, B 541 Phanerochaete chrysosporium EC#: 1.1.99.18 IUBMB
Fragment: c-terminal flavoprotein fragment
Gene Name(s): CDH-1 CDH-2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6FA
Query on 6FA

A, B 6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O16 P2
BJSUUWFQAMLNKU-OKXKTURISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ABL
Query on ABL

A, B (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)- 6-oxopiperidin-3-yl beta-D-glucopyranoside
5-lactam, (Synonym)
C12 H21 N O10
WXSNJJDPPISYEF-ZNLUKOTNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ABL N/A in BindingDB
Ki: 250000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.146
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 185.95 α = 90.00
b = 185.95 β = 90.00
c = 81.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-27
  • Released Date: 2003-01-14
  • Deposition author(s): Hallberg, B.M., Henriksson, G., Pettersson, G., Vasella, A., Divne, C.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update