1N73

Fibrin D-Dimer, Lamprey complexed with the PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE

Structural Biology Knowledgebase: 1N73 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.258

Literature

Macromolecules
Sequence Display for 1N73

Classification: BLOOD CLOTTING

Total Structure Weight: 181521.58

Macromolecule Entities
Molecule Chains Length Organism Details
Fibrin alpha-1 chain A, D 119 Petromyzon marinus Mutation: T153A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fibrin beta chain B, E 323 Petromyzon marinus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fibrin gamma chain C, F 330 Petromyzon marinus Gene Name(s): FGG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
peptide ligand: Gly-his-Arg-Pro-amide G, H, I, J 4 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, C, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B, C, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.258
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 49.73 α = 99.58
b = 99.30 β = 101.46
c = 120.73 γ = 92.36

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-12
  • Released Date: 2003-01-07
  • Deposition author(s): Yang, Z., Pandi, L., Doolittle, R.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update