1N62

Crystal Structure of the Mo,Cu-CO Dehydrogenase (CODH), n-butylisocyanide-bound state

Structural Biology Knowledgebase: 1N62 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 1N62

Classification: oxidoreductase

Total Structure Weight: 278246.69

Macromolecule Entities
Molecule Chains Length Organism Details
Carbon monoxide dehydrogenase small chain A, D 166 Oligotropha carboxidovorans EC#: 1.2.99.2 IUBMB
Gene Name(s): coxS OCA5_pHCG300300
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Carbon monoxide dehydrogenase large chain B, E 809 Oligotropha carboxidovorans EC#: 1.2.99.2 IUBMB
Gene Name(s): coxL OCA5_pHCG300310
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Carbon monoxide dehydrogenase medium chain C, F 288 Oligotropha carboxidovorans EC#: 1.2.99.2 IUBMB
Gene Name(s): coxM OCA5_pHCG300290
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

C, F FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MCN
Query on MCN

B, E PTERIN CYTOSINE DINUCLEOTIDE
C19 H22 N8 O13 P2 S2
RBWYFPNWTRZKKZ-LOIMWUFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CUB
Query on CUB

B, E CU(I)-S-MO(IV)(=O)O-NBIC CLUSTER
C5 H9 Cu Mo N O2 S
KNSQHRMNQABPBN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A, D FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 117.86 α = 90.00
b = 130.02 β = 90.00
c = 156.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-08
  • Released Date: 2002-12-18
  • Deposition author(s): Dobbek, H., Gremer, L., Kiefersauer, R., Huber, R., Meyer, O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name