1N5C

Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Observed: 0.161

Literature

Macromolecules
Sequence Display for 1N5C

Classification: DNA

Total Structure Weight: 3710.40

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(EDC)P*GP*CP*G)-3' A 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
EDC
Query on EDC
A DNA LINKING C11 H14 N3 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Observed: 0.161
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 26.72 α = 90.00
b = 26.72 β = 90.00
c = 101.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-05
  • Released Date: 2003-06-03
  • Deposition author(s): Freisinger, E., Fernandes, A., Grollman, A.P., Kisker, C.F.

Revision History

  • Version 1_0: 2003-06-03

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2012-01-18

    Type: Atomic model