1N4P

Protein Geranylgeranyltransferase type-I Complexed with Geranylgeranyl Diphosphate

Structural Biology Knowledgebase: 1N4P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1N4P

Classification: TRANSFERASE

Total Structure Weight: 525915.44

Macromolecule Entities
Molecule Chains Length Organism Details
protein farnesyltransferase alpha subunit A, C, E..., G, I, KA, C, E, G, I, K 377 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
geranyltransferase type-I beta subunit B, D, F..., H, J, LB, D, F, H, J, L 377 Rattus norvegicus EC#: 2.5.1.59 IUBMB
Gene Name(s): Pggt1b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b M, N 11 Homo sapiens Details: Fusion protein comprises reference sequence residues 178-184 of transforming protein p21b and 180-183 of Ras related protein Rap-2b
Gene Name(s): RAP2B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GRG
Query on GRG

B, D, F, H, J, L GERANYLGERANYL DIPHOSPHATE
C20 H36 O7 P2
OINNEUNVOZHBOX-QIRCYJPOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GER
Query on GER

M, N GERAN-8-YL GERAN
C20 H34
HSOYJGBJQAKCNA-CAIKYXSQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, D, F, H, J, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, C, D, F, G, H, J, K, L CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.204
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 272.34 α = 90.00
b = 271.57 β = 131.56
c = 185.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-01
  • Released Date: 2003-11-18
  • Deposition author(s): Taylor, J.S., Reid, T.S., Casey, P.J., Beese, L.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4