1N46

CRYSTAL STRUCTURE OF HUMAN TR BETA LIGAND-BINDING DOMAIN COMPLEXED WITH A POTENT SUBTYPE-SELECTIVE THYROMIMETIC

Structural Biology Knowledgebase: 1N46 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1N46

Classification: TRANSCRIPTION

Total Structure Weight: 59040.74

Macromolecule Entities
Molecule Chains Length Organism Details
Thyroid hormone receptor Beta-1 A, B 258 Homo sapiens Gene Name(s): THRB Gene View ERBA2 NR1A2 THR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PFA
Query on PFA

A, B [4-(4-HYDROXY-3-ISOPROPYL-PHENOXY)-3,5-DIMETHYL- PHENYL]-6-AZAURACIL
2,,5- DIMETHYL-PHENYL]-2H-[1 (Synonym)
C20 H21 N3 O4
RXQAVKWRCZYGMV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PFA Ki: 0.03 nM (100) BindingDB

Ki: 0.03 nM  BindingMOAD
Ki: 0.03 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.192
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.92 α = 90.00
b = 105.32 β = 98.19
c = 55.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-30
  • Released Date: 2003-04-22
  • Deposition author(s): Dow, R.L., Schneider, S.R., Paight, E.S., Hank, R.F., Chiang, P., Cornelius, P., Lee, E., Newsome, W.P., Swick, A.G., Spitzer, J., Hargrove, D.M., Patterson, T.A., Pandit, J., Chrunyk, B.A., LeMotte, P.K., Danley, D.E., Rosner, M.H., Ammirati, M.J., Simons, S.P., Schulte, G.K., Tate, B.F., DaSilva-Jardine, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4