1N38

reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed

Structural Biology Knowledgebase: 1N38 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1N38

Classification: TRANSFERASE / RNA

Total Structure Weight: 146420.53


Macromolecule Entities
Molecule Chains Length Organism Details
Minor core protein lambda 3 A 1267 Mammalian orthoreovirus EC#: 2.7.7.48 IUBMB
Gene Name(s): L1
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(P*GP*C)-3' B 2 synthetic
5'-R(*AP*UP*UP*AP*GP*C)-3' C 6 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U3H
Query on U3H

A 3'-DEOXY-URIDINE 5'-TRIPHOSPHATE
C9 H17 N2 O14 P3
CVEDUOUYNXHQBA-HIORRCEOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CH1
Query on CH1

A 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
CHKFLBOLYREYDO-SHYZEUOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.72 α = 90.00
b = 85.21 β = 90.00
c = 248.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-25
  • Released Date: 2002-12-25
  • Deposition author(s): Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4