1N1H

Initiation complex of polymerase lambda3 from reovirus

Structural Biology Knowledgebase: 1N1H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1N1H

Classification: TRANSFERASE / RNA

Total Structure Weight: 146206.42


Macromolecule Entities
Molecule Chains Length Organism Details
Minor core protein lambda 3 A 1267 Mammalian orthoreovirus EC#: 2.7.7.48 IUBMB
Gene Name(s): L1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*AP*UP*UP*AP*GP*C)-3' B 6 synthetic

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GH3
Query on GH3

A 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
QGYIFQKZZSSUCR-OBXARNEKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CH1
Query on CH1

A 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
CHKFLBOLYREYDO-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G7M
Query on G7M

A N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
C11 H17 N5 O8 P
AOKQNZVJJXPUQA-KQYNXXCUSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.216
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.88 α = 90.00
b = 85.01 β = 90.00
c = 249.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-17
  • Released Date: 2002-12-25
  • Deposition author(s): Tao, Y., Farsetta, D.L., Nibert, M.L., Harrison, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4