1N1G

Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase with inhibitor BCP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 1N1G

Classification: OXIDOREDUCTASE

Total Structure Weight: 40274.61

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol-3-phosphate dehydrogenase A 366 Leishmania mexicana EC#: 1.1.1.8 IUBMB
Gene Name(s): GPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLM
Query on PLM

A PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCP
Query on BCP

A 2-BROMO-6-CHLORO-PURINE
C5 H2 Br Cl N4
VLGHYTLGJNPTEN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BCP N/A in BindingDB
IC50: 5000000 nM  BindingMOAD
IC50: ~5000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.206
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 70.42 α = 90.00
b = 70.42 β = 90.00
c = 210.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-17
  • Released Date: 2003-10-28
  • Deposition author(s): Choe, J., Hol, W.G.

Revision History

  • Version 1_0: 2003-10-28

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance