1N0U

Crystal structure of yeast elongation factor 2 in complex with sordarin

Structural Biology Knowledgebase: 1N0U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1N0U

Classification: TRANSLATION

Total Structure Weight: 93902.52

Macromolecule Entities
Molecule Chains Length Organism Details
Elongation factor 2 A 842 Saccharomyces cerevisiae Gene Name(s): EFT1 YOR133W O3317 YOR3317W EFT2 YDR385W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO1
Query on SO1

A [1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A- [(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]- 4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL- 3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE- 3A(1H)-CARBOXYLIC ACID
SORDARIN (Synonym)
C27 H42 O8
DIBGPTPYRVEPSP-OHFCZZTFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.236
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.96 α = 90.00
b = 150.83 β = 90.00
c = 65.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-15
  • Released Date: 2003-02-11
  • Deposition author(s): Joergensen, R., Ortiz, P.A., Carr-Schmid, A., Nissen, P., Kinzy, T.G., Andersen, G.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4