POP-OUT | CLOSE
 
NMR Structure of duplex DNA d(CCAAGGXCTTGGG), X is a 3' phosphoglycolate, 5'phosphate gapped lesion
DOI:10.2210/pdb1n0k/pdb   NDB ID: 1N0K
1N0K
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7767.13
    Molecule: 5'-D(*CP*CP*AP*AP*GP*G)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: A
    Molecule: 5'-D(P*CP*TP*TP*GP*GP*G)-3'
    Polymer: 2 Type: dna Length: 6
    Chains: B
    Molecule: 5'-D(*CP*CP*CP*AP*AP*GP*GP*CP*CP*TP*TP*GP*G)-3'
    Polymer: 3 Type: dna Length: 13
    Chains: C
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1G5K  ENSEMBLE: 1G5K is the structure of the oligonucleotide containing the phosphoglycolate lesion without the bleomycin bound. 
    1GJ1  Minimized average structure: NMR STRUCTURE OF AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION 
    1N0O  This entry is the ensemble model for PDB ENTRY 1N0K 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PGA
    Search 
    Download 
    PGA C2 H5 O6 P
    2-PHOSPHOGLYCOLIC ACID
    PGA:1N0K
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 1N0K
     
 
Data in orange boxes are gathered from external resources (when available).
 
Structure Image
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Junker, H.-D.,  Hoehn, S.T.,  Bunt, R.C.,  Marathius, V.,  Chen, J.,  Turner, C.J.,  Stubbe, J.

    Deposition:   2002-10-14
    Release:   2003-01-07
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    N/A
    NMR Ensemble
    Conformers Calculated:     10
    Conformers Submitted:     1
    Selection Criteria: minimum rmsd and nmr constraints violation
    NMR Refine
    Method: SOLUTION NMR