1MZP

Structure of the L1 protuberance in the ribosome

Structural Biology Knowledgebase: 1MZP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MZP

Classification: RIBOSOME

Total Structure Weight: 42600.32


Macromolecule Entities
Molecule Chains Length Organism Details
50s ribosomal protein L1P A 217 Sulfolobus acidocaldarius Mutation: M41M, I105R, M117M, I156L, M174M, M209M
Gene Name(s): rpl1 Saci_1458
Macromolecule Entities
Molecule Chains Length Organism Details
fragment of 23S rRNA B 55 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.219
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 156.01 α = 90.00
b = 156.01 β = 90.00
c = 90.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-09
  • Released Date: 2003-01-21
  • Deposition author(s): Nikulin, A., Eliseikina, I., Tishchenko, S., Nevskaya, N., Davydova, N., Platonova, O., Piendl, W., Selmer, M., Liljas, A., Zimmermann, R., Garber, M., Nikonov, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4