Crystal structure of geneticin bound to the eubacterial 16S rRNA A site
DOI:10.2210/pdb1mwl/pdb   NDB ID: DR0008
1MWL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 15089.73
    Molecule: 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
    Polymer: 1 Type: rna Length: 22
    Chains: A, B
    Details: eubacterial 16S rRNA A site. The oligonucleotide contains two A sites.
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1J7T   Complex with paromomycin 
    1LC4   Complex with tobramycin 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GET
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    GET C20 H40 N4 O10
    GENETICIN
    GET:1MWL
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:DR0008
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Vicens, Q.,  Westhof, E.

    Deposition:   2002-09-30
    Release:   2003-02-18
    Last Modified (REVDAT):   2012-02-08
     
  •   Revision History    Hide
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    2012-02-08
    Binding sites and description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.224 (obs.)
    R-Free: 0.249
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 46.20 α = 90.00 
    b = 33.18 β = 104.13 
    c = 51.74 γ = 90.00