1MWL

Crystal structure of geneticin bound to the eubacterial 16S rRNA A site

Structural Biology Knowledgebase: 1MWL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MWL

Classification: RNA

Total Structure Weight: 15089.72

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' A, B 22 synthetic eubacterial 16S rRNA A site. The oligonucleotide contains two A sites.

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GET
Query on GET

A GENETICIN
G418 (Synonym)
C20 H40 N4 O10
BRZYSWJRSDMWLG-DJWUNRQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.20 α = 90.00
b = 33.18 β = 104.13
c = 51.74 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-09-30
  • Released Date: 2003-02-18
  • Deposition author(s): Vicens, Q., Westhof, E.

Revision History

  • 2012-02-08
    Type: Binding sites and description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4