1MUI

Crystal structure of HIV-1 protease complexed with Lopinavir.

Structural Biology Knowledgebase: 1MUI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.261

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MUI

Classification: HYDROLASE

Total Structure Weight: 22236.51

Macromolecule Entities
Molecule Chains Length Organism Details
protease A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: residues 57-155
Mutation: N37S
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AB1
Query on AB1

B N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]- 3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2- OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
ABT-378, LOPINAVIR (Synonym)
C37 H48 N4 O5
KJHKTHWMRKYKJE-SUGCFTRWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AB1 N/A in BindingDB
N/A in BindingMoad
Ki: 0.0013 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.261
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 63.26 α = 90.00
b = 63.26 β = 90.00
c = 83.62 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-23
  • Released Date: 2002-10-23
  • Deposition author(s): Stoll, V., Qin, W., Stewart, K.D., Jakob, C., Park, C., Walter, K., Simmer, R.L., Helfrich, R., Bussiere, D., Kao, J., Kempf, D., Sham, H.L., Norbeck, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4