1MQT

Swine Vesicular Disease Virus coat protein

Structural Biology Knowledgebase: 1MQT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.257

Literature

Macromolecules
Sequence Display for 1MQT

Classification: Virus [ VIPERdb ]

Total Structure Weight: 1405894.00

Macromolecule Entities
Molecule Chains Length Organism Details
Polyprotein A 283 Enterovirus b Fragment: SVDV COAT PROTEIN VP1
Gene Name(s): 1ABCD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polyprotein Capsid Protein B 261 Enterovirus b Fragment: SVDV COAT PROTEIN VP2
Gene Name(s): 1ABCD
Polyprotein Capsid Protein C 238 Enterovirus b Fragment: SVDV COAT PROTEIN VP3
Gene Name(s): 1ABCD
Polyprotein Capsid Protein D 68 Enterovirus b Fragment: SVDV COAT PROTEIN VP4
Gene Name(s): 1ABCD

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPL
Query on SPL

A OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL- HEPTADEC-3-ENYL)-AMIDE
CERAMIDE (Synonym)
C26 H51 N O3
APDLCSPGWPLYEQ-WUBHUQEYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.257
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 318.35 α = 90.00
b = 349.96 β = 90.00
c = 371.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-17
  • Released Date: 2004-03-02
  • Deposition author(s): Verdaguer, N., Jimenez-Clavero, M.A., Fita, I., Ley, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4