1MQ6

Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1MQ6

Classification: BLOOD CLOTTING

Total Structure Weight: 32691.34

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTOR X HEAVY CHAIN A 233 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAGULATION FACTOR X LIGHT CHAIN L 51 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2
Gene Name(s): F10 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XLD
Query on XLD

A 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]- 6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]- 2-THIOPHENECARBOXAMIDE
C23 H20 Cl3 N5 O4 S
FBXIHZSULWMHJY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XLD Ki: 0.007 - 0.29 nM (86 - 100) BindingDB

Ki: 0.007 nM  BindingMOAD
Ki: 0.007 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.64 α = 90.00
b = 73.29 β = 90.00
c = 79.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-13
  • Released Date: 2003-01-28
  • Deposition author(s): Adler, M., Whitlow, M.

Revision History

  • Version 1_0: 2003-01-28

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_3: 2017-10-11

    Type: Advisory, Refinement description