1MOJ

Crystal structure of an archaeal dps-homologue from Halobacterium salinarum

Structural Biology Knowledgebase: 1MOJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 1MOJ

Classification: DNA BINDING PROTEIN

Total Structure Weight: 80966.31

Macromolecule Entities
Molecule Chains Length Organism Details
Dps-like ferritin A, B, C, D 182 Halobacterium salinarum EC#: 1.16 IUBMB
Gene Name(s): dps dpsA VNG_2443G OE4427R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A, B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.147
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 90.75 α = 90.00
b = 90.75 β = 90.00
c = 149.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-09
  • Released Date: 2004-04-20
  • Deposition author(s): Zeth, K., Offermann, S., Essen, L.O., Oesterhelt, D.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4