1MOG

Crystal structure of H. salinarum dodecin

Structural Biology Knowledgebase: 1MOG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1MOG

Classification: UNKNOWN FUNCTION

Total Structure Weight: 7829.81

Macromolecule Entities
Molecule Chains Length Organism Details
Dodecin A 67 Halobacterium salinarum Fragment: residues 10-77
Gene Name(s): VNG_1446H
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RBF
Query on RBF

A RIBOFLAVIN
RIBOFLAVINE; VITAMIN B2 (Synonym)
C17 H20 N4 O6
AUNGANRZJHBGPY-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.180
  • Space Group: F 41 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.89 α = 90.00
b = 141.89 β = 90.00
c = 141.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-09
  • Released Date: 2003-04-15
  • Deposition author(s): Bieger, B., Essen, L.-O., Oesterhelt, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values