1MLY

Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in complex with the cis isomer of amiclenomycin

Structural Biology Knowledgebase: 1MLY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1MLY

Classification: TRANSFERASE

Total Structure Weight: 95554.41

Macromolecule Entities
Molecule Chains Length Organism Details
7,8-diamino-pelargonic acid aminotransferase A, B 429 Escherichia coli EC#: 2.6.1.62 IUBMB
Mutation: W14L
Gene Name(s): bioA b0774 JW0757
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACZ
Query on ACZ

A, B CIS-AMICLENOMYCIN
5-DIENYL)- BUTYRIC ACID, (Synonym)
C10 H16 N2 O2
LAJWZJCOWPUSOA-SMOXQLQSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.194
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.65 α = 90.00
b = 56.07 β = 109.86
c = 116.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-02
  • Released Date: 2002-12-04
  • Deposition author(s): Sandmark, J., Mann, S., Marquet, A., Schneider, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update