1MFD

THE SOLUTION STRUCTURE OF A TRISACCHARIDE-ANTIBODY COMPLEX: COMPARISON OF NMR MEASUREMENTS WITH A CRYSTAL STRUCTURE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.183

Literature

Macromolecules
Sequence Display for 1MFD

Classification: IMMUNOGLOBULIN

Total Structure Weight: 47218.59

Macromolecule Entities
Molecule Chains Length Organism Details
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) L 215 Mus musculus Mutation: A28T, T31S, S32G, Y34H, G52D, T82P, Y94C, S95N, V99I
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) H 219 Mus musculus Mutation: ΔA239, D468R

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MMA
Query on MMA

H O1-METHYL-MANNOSE
C7 H14 O6
HOVAGTYPODGVJG-VEIUFWFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLA
Query on GLA

H ALPHA D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-PHYPRBDBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ABE
Query on ABE

H ABEQUOSE
C6 H12 O4
KYPWIZMAJMNPMJ-KAZBKCHUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.183
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.30 α = 90.00
b = 129.30 β = 90.00
c = 79.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1993-10-25
  • Released Date: 1994-01-31
  • Deposition author(s): Zdanov, A., Cygler, M.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance