1MEY

CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA

Structural Biology Knowledgebase: 1MEY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1MEY

Classification: TRANSFERASE / DNA

Total Structure Weight: 47137.27


Macromolecule Entities
Molecule Chains Length Organism Details
CONSENSUS ZINC FINGER C, F, G 87 synthetic
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3') A, D 13 synthetic
DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3') B, E 13 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, F, G ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

G CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
C38
Query on C38
B, E DNA LINKING C9 H13 I N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.224
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 62.07 α = 90.00
b = 165.53 β = 90.00
c = 46.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-09-27
  • Released Date: 1997-03-12
  • Deposition author(s): Kim, C.A., Berg, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4