1MDT

THE REFINED STRUCTURE OF MONOMERIC DIPHTHERIA TOXIN AT 2.3 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1MDT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1MDT

Classification: TOXIN

Total Structure Weight: 118130.92

Macromolecule Entities
Molecule Chains Length Organism Details
DIPHTHERIA TOXIN A, B 535 Corynephage beta Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
APU
Query on APU

A, B ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE
C19 H25 N7 O15 P2
FZCSEXOMUJFOHQ-KPKSGTNCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed:
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 168.50 α = 90.00
b = 135.50 β = 90.00
c = 47.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-03-21
  • Released Date: 1994-07-31
  • Deposition author(s): Bennett, M.J., Eisenberg, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4