CRYSTAL STRUCTURE OF DhbE IN COMPLEX WITH DHB AND AMP
1MD9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 60865.35
    Molecule: 2,3-dihydroxybenzoate-AMP ligase
    Polymer: 1 Type: protein Length: 539
    Chains: A
    EC#: 6.3.2   
    Organism: Bacillus subtilis
    Gene Names: dhbE entE BSU31980
    UniProtKB: Protein Feature View | Search PDB | P40871  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bacillus subtilis   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1AMU   Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp and Phenylalanine 
    1MDB   Crystal structure of DhbE in complex with DHB-adenylate 
    1MDF   Crystal structure of DhbE in absence of substrate 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AMP
    Search 
    Download 
    AMP C10 H14 N5 O7 P
    ADENOSINE MONOPHOSPHATE
    AMP:1MD9
    DBH
    Search 
    Download 
    DBH C7 H6 O4
    2,3-DIHYDROXY-BENZOIC ACID
    DBH:1MD9
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
    Search 
    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   May, J.J.,  Kessler, N.,  Marahiel, M.A.,  Stubbs, M.T.

    Deposition:   2002-08-07
    Release:   2002-09-11
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.80
    R-Value: 0.232 (work)
    R-Free: 0.288
    Space Group: P 31
    Unit Cell:
      Length [Å] Angles [°]
    a = 66.90 α = 90.00 
    b = 66.90 β = 90.00 
    c = 114.80 γ = 120.00