1MD7

Monomeric structure of the zymogen of complement protease C1r

Structural Biology Knowledgebase: 1MD7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1MD7

Classification: Hydrolase

Total Structure Weight: 37275.41

Macromolecule Entities
Molecule Chains Length Organism Details
C1R COMPLEMENT SERINE PROTEASE A 328 Homo sapiens EC#: 3.4.21.41 IUBMB
Fragment: C-terminal CCP-SP domain
Mutation: S637A
Gene Name(s): C1R Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.217
  • Space Group: P 64
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 167.06 α = 90.00
b = 167.06 β = 90.00
c = 43.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-07
  • Released Date: 2003-08-07
  • Deposition author(s): Budayova-Spano, M., Grabarse, W., Thielens, N.M., Hillen, H., Lacroix, M., Schmidt, M., Fontecilla-Camps, J., Arlaud, G.J., Gaboriaud, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4