1MAB

RAT LIVER F1-ATPASE

Structural Biology Knowledgebase: 1MAB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1MAB

Classification: HYDROLASE

Total Structure Weight: 137782.19

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (F1-ATPASE ALPHA CHAIN) A 510 Rattus norvegicus EC#: 3.6.3.14 IUBMB
Fragment: ALPHA CHAIN
Gene Name(s): Atp5a1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (F1-ATPASE BETA CHAIN) B 479 Rattus norvegicus EC#: 3.6.3.14 IUBMB
Fragment: BETA CHAIN
Gene Name(s): Atp5b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (F1-ATPASE GAMMA CHAIN) G 270 Rattus norvegicus EC#: 3.6.3.14 IUBMB
Fragment: GAMMA CHAIN
Mutation: K1R
Gene Name(s): Atp5c1 Atp5c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.217
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 143.67 α = 90.00
b = 143.67 β = 90.00
c = 361.15 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-06
  • Released Date: 1998-09-30
  • Deposition author(s): Bianchet, M.A., Amzel, L.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4