1M7Y

Crystal structure of apple ACC synthase in complex with L-aminoethoxyvinylglycine

Structural Biology Knowledgebase: 1M7Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1M7Y

Classification: LYASE

Total Structure Weight: 49599.72

Macromolecule Entities
Molecule Chains Length Organism Details
1-aminocyclopropane-1-carboxylate synthase A 435 Malus domestica EC#: 4.4.1.14 IUBMB
Fragment: RESIDUES 1-435
Gene Name(s): ACS-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PPG
Query on PPG

A (2E,3E)-4-(2-aminoethoxy)-2-[({3-hydroxy- 2-methyl-5-[(phosphonooxy)methyl]pyridin- 4-yl}methyl)imino]but-3-enoic acid
C14 H20 N3 O8 P
OBCQKAZQAHYUOZ-CALQLVRRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PPG N/A in BindingDB
N/A in BindingMoad
Kd: 0.011 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.205
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.31 α = 90.00
b = 61.14 β = 123.36
c = 77.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-23
  • Released Date: 2002-12-23
  • Deposition author(s): Capitani, G., McCarthy, D., Gut, H., Gruetter, M.G., Kirsch, J.F.

Revision History

  • 2011-12-28
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values