1M7B

Crystal structure of Rnd3/RhoE: functional implications

Structural Biology Knowledgebase: 1M7B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1M7B

Classification: SIGNALING PROTEIN

Total Structure Weight: 21039.73

Macromolecule Entities
Molecule Chains Length Organism Details
Rnd3/RhoE small GTP-binding protein A 184 Homo sapiens Fragment: Rnd3(residues 19-200)
Gene Name(s): RND3 Gene View ARHE RHO8 RHOE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.201
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.59 α = 90.00
b = 69.93 β = 90.00
c = 97.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-19
  • Released Date: 2002-08-07
  • Deposition author(s): Fiegen, D., Blumenstein, L., Stege, P., Vetter, I.R., Ahmadian, M.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4