1M6U

Crystal Structure of a Novel DNA-binding domain from Ndt80, a Transcriptional Activator Required for Meiosis in Yeast


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1M6U

Classification: TRANSCRIPTION ACTIVATOR

Total Structure Weight: 62999.16

Macromolecule Entities
Molecule Chains Length Organism Details
Ndt80 protein A, B 272 Saccharomyces cerevisiae Fragment: DNA binding domain, residues 59-330
Mutation: M213T, D225N, S267F
Gene Name(s): NDT80 DAS1 YHR124W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 101.28 α = 90.00
b = 64.90 β = 107.52
c = 92.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-17
  • Released Date: 2002-11-06
  • Deposition author(s): Montano, S.P., Cote, M.L., Fingerman, I., Pierce, M., Vershon, A.K., Georgiadis, M.M.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance