Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove     DOI:10.2210/pdb1m6f/pdb   NDB ID: DD0052

1M6F Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: DNA Structure Weight: 7703.57   Molecule: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Polymer: 1 Type: polydeoxyribonucleotide Length: 12 Chains: A, B       Source Hide Polymer: 1 Scientific Name: Synthetic construct         Ligand Chemical Component Hide Identifier Name Formula Interaction View Links CGQ     3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)- HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM] -IMINOMETHYL]- BENZAMIDINIUM C17 H22 N9 Ligand Explorer MG     MAGNESIUM ION Mg Ligand Explorer     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Nguyen, B.,   Lee, M.P.H.,   Hamelberg, D.,   Joubert, A.,   Bailly, C.,   Brun, R.,   Neidle, S.,   Wilson, W.D. Deposition:   2002-07-16 Release:   2002-11-15 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 1.78 R-Value: 0.205 (obs.) R-Free: 0.277 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 24.10 α = 90.00  b = 39.82 β = 90.00  c = 65.62 γ = 90.00