1M69

Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2

Structural Biology Knowledgebase: 1M69 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.132

Literature

Macromolecules
Sequence Display for 1M69

Classification: DNA

Total Structure Weight: 2790.16

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*TP*AP*CP*G)-3' A 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAX
Query on DAX

A 5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE- 4-CARBOXAMIDE
C18 H21 Br N4 O
NROQPXQSDDINMC-UHFFFAOYSA-P
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.132
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 30.19 α = 90.00
b = 30.19 β = 90.00
c = 39.44 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-07-15
  • Released Date: 2003-08-19
  • Deposition author(s): Teixeira, S.C.M., Thorpe, J.H., Todd, A.K., Cardin, C.J.

Revision History

  • 2012-02-08
    Type: Binding sites and description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4