1M0W

Yeast Glutathione Synthase Bound to gamma-glutamyl-cysteine, AMP-PNP and 2 Magnesium Ions

Structural Biology Knowledgebase: 1M0W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 1M0W

Classification: LIGASE

Total Structure Weight: 114041.83

Macromolecule Entities
Molecule Chains Length Organism Details
glutathione synthetase A, B 491 Saccharomyces cerevisiae EC#: 6.3.2.3 IUBMB
Gene Name(s): GSH2 YOL049W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3GC
Query on 3GC

A, B GAMMA-GLUTAMYLCYSTEINE
C8 H14 N2 O5 S
RITKHVBHSGLULN-WHFBIAKZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.172
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 51.66 α = 82.08
b = 52.01 β = 86.77
c = 100.64 γ = 77.49

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-14
  • Released Date: 2002-12-11
  • Deposition author(s): Gogos, A., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4