1LYX

Plasmodium Falciparum Triosephosphate Isomerase (PfTIM)-Phosphoglycolate complex

Structural Biology Knowledgebase: 1LYX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1LYX

Classification: ISOMERASE

Total Structure Weight: 28153.99

Macromolecule Entities
Molecule Chains Length Organism Details
Triosephosphate Isomerase A 248 Plasmodium falciparum EC#: 5.3.1.1 IUBMB
Mutation: A163V
Gene Name(s): TPI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGA
Query on PGA

A 2-PHOSPHOGLYCOLIC ACID
C2 H5 O6 P
ASCFNMCAHFUBCO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PGA N/A in BindingDB
Ki: 29000 nM  BindingMOAD
Ki: 29000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 88.24 α = 90.00
b = 63.44 β = 117.74
c = 53.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-10
  • Released Date: 2003-01-28
  • Deposition author(s): Parthasarathy, S., Balaram, H., Balaram, P., Murthy, M.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values