1LYV

High-resolution structure of the catalytically inactive yersinia tyrosine phosphatase C403A mutant in complex with phosphate.

Structural Biology Knowledgebase: 1LYV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Observed: 0.129

Literature

Macromolecules
Sequence Display for 1LYV

Classification: hydrolase

Total Structure Weight: 33668.46

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN-TYROSINE PHOSPHATASE YOPH A 306 Yersinia enterocolitica EC#: 3.1.3.48 IUBMB
Fragment: PTPase domain
Mutation: P163M, C235R, C403S
Gene Name(s): yopH yop51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Observed: 0.129
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.46 α = 90.00
b = 49.33 β = 90.00
c = 97.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-08
  • Released Date: 2002-07-03
  • Deposition author(s): Evdokimov, A.G., Waugh, D.S., Routzahn, K., Tropea, J., Cherry, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4