1LVG

Crystal structure of mouse guanylate kinase in complex with GMP and ADP

Structural Biology Knowledgebase: 1LVG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1LVG

Classification: TRANSFERASE

Total Structure Weight: 22777.62

Macromolecule Entities
Molecule Chains Length Organism Details
Guanylate kinase A 198 Mus musculus EC#: 2.7.4.8 IUBMB
Gene Name(s): Guk1 Gmk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
5GP
Query on 5GP

A GUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O8 P
RQFCJASXJCIDSX-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.188
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 67.24 α = 90.00
b = 67.24 β = 90.00
c = 108.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-28
  • Released Date: 2002-12-11
  • Deposition author(s): Sekulic, N., Shuvalova, L., Spangenberg, O., Konrad, M., Lavie, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4