1LVA

Crystal structure of a C-terminal fragment of Moorella thermoacetica elongation factor SelB

Structural Biology Knowledgebase: 1LVA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 1LVA

Classification: translation

Total Structure Weight: 30011.70

Macromolecule Entities
Molecule Chains Length Organism Details
Selenocysteine-specific elongation factor A 258 Moorella thermoacetica Fragment: C-terminal fragment
Mutation: M417M
Gene Name(s): selB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Y1
Query on Y1

A YTTRIUM ION
Y
KAJPZYFHSCFBCI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.215
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.84 α = 90.00
b = 67.01 β = 90.00
c = 105.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-28
  • Released Date: 2002-08-21
  • Deposition author(s): Selmer, M., Su, X.-D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4