CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 41.
1LPZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 44267.16
    Molecule: Blood coagulation factor Xa
    Polymer: 1 Type: protein Length: 134
    Chains: A
    EC#: 3.4.21.6   
    Fragment: light chain
    Organism: Homo sapiens
    Gene Name: Gene View for F10
    UniProtKB: Search PDB | P00742   Protein Feature View
    Molecule: Blood coagulation factor Xa
    Polymer: 2 Type: protein Length: 254
    Chains: B
    EC#: 3.4.21.6   
    Organism: Homo sapiens
    Gene Name: Gene View for F10
    UniProtKB: Search PDB | P00742   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human  
     
  •   Related PDB Entries Hide
    Identifier Details
    1LPG   1LPG contains the crystal structure of the same protein complexed with a different inhibitor of the same series at 2.0 angstrom 
    1LPK   1LPK contains the crystal structure of the same protein complexed with a different inhibitor of the same series at 2.2 angstrom 
    1LQD   1LQD contains the crystal structure of the same protein complexed with a different inhibitor of the same series at 2.7 angstrom 
    1LQE   1LQE contains the crystal structure of the related protein trypsin complexed with a different inhibitor from the same series at 2.2 angstrom 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    CMB
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    CMB C25 H22 Cl2 N4 O
    1-(3-carbamimidoylbenzyl)-N-(3,5-dichlorobenzyl)- 4-methyl-1H-indole-2-carboxamide
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    CMB
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    CMB
    Ki: nM () - data from BindingDB  
    Ki: 25 nM - data from BindingMOAD  
    Ki: 25 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Schreuder, H.A.,  Brachvogel, V.,  Liesum, A.

    Deposition:   2002-05-08
    Release:   2003-05-08
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.189 (obs.)
    R-Free: 0.279
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.30 α = 90.00 
    b = 72.00 β = 90.00 
    c = 78.30 γ = 90.00