1LPG

CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 79.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 1LPG

Classification: HYDROLASE

Total Structure Weight: 44348.15

Macromolecule Entities
Molecule Chains Length Organism Details
Blood coagulation factor Xa A 134 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: light chain
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Blood coagulation factor Xa B 254 Homo sapiens EC#: 3.4.21.6 IUBMB
Gene Name(s): F10 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IMA
Query on IMA

B [4-({[5-BENZYLOXY-1-(3-CARBAMIMIDOYL-BENZYL)- 1H-INDOLE-2-CARBONYL]-AMINO}-METHYL)-PHENYL]- TRIMETHYL-AMMONIUM
C34 H36 N5 O2
UFKJQTGPBFWMGT-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IMA Ki: 82 nM (100) BindingDB

Ki: 82 nM  BindingMOAD
Ki: 82 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.165
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.20 α = 90.00
b = 72.00 β = 90.00
c = 78.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-08
  • Released Date: 2003-05-08
  • Deposition author(s): Schreuder, H.A., Brachvogel, V., Liesum, A.

Revision History

  • Version 1_0: 2003-05-08

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance