1LJM

DNA recognition is mediated by conformational transition and by DNA bending

Structural Biology Knowledgebase: 1LJM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1LJM

Classification: TRANSCRIPTION

Total Structure Weight: 29336.87

Macromolecule Entities
Molecule Chains Length Organism Details
RUNX1 transcription factor A, B 131 Homo sapiens Fragment: Runt domain
Gene Name(s): RUNX1 Gene View AML1 CBFA2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.193
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 121.23 α = 90.00
b = 121.23 β = 90.00
c = 186.33 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-22
  • Released Date: 2002-11-06
  • Deposition author(s): Bartfeld, D., Shimon, L., Couture, G.C., Rabinovich, D., Frolow, F., Levanon, D., Groner, Y., Shakked, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4