1LJ0

Structure of quintuple mutant of the rat outer mitocondrial cytochrome b5.

Structural Biology Knowledgebase: 1LJ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1LJ0

Classification: ELECTRON TRANSPORT

Total Structure Weight: 44236.58

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome B5 outer mitochondrial membrane isoform A, B, C, D 92 Rattus norvegicus Fragment: water soluble domain
Mutation: A18S, I25L, I32L, L47R, L71S
Gene Name(s): Cyb5b Cyb5m Omb5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.75 α = 90.00
b = 50.85 β = 90.00
c = 167.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-18
  • Released Date: 2002-11-20
  • Deposition author(s): Cowley, A.B., Altuve, A., Kuchment, O., Terzyan, S., Zhang, X.C., Rivera, M., Benson, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4