1LHD

HUMAN ALPHA-THROMBIN COMPLEXED WITH AC-(D)PHE-PRO-BOROLYS-OH

Structural Biology Knowledgebase: 1LHD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Observed: 0.201

Literature

Macromolecules
Sequence Display for 1LHD

Classification: COMPLEX (SERINE PROTEASE / INHIBITOR)

Total Structure Weight: 35777.85

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-THROMBIN L 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ALPHA-THROMBIN H 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
HIRUDIN I 12 Hirudo medicinalis Fragment: RESIDUES 54 - 65

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DI2
Query on DI2

H AC-(D)PHE-PRO-BOROLYS-OH
C21 H33 B N4 O5
UCQIHCRMWNRFNP-QYZOEREBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DI2 Ki: 0.24 - 200 nM (87 - 100) BindingDB

N/A in BindingMoad
Ki: 0.24 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Observed: 0.201
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 70.30 α = 90.00
b = 71.90 β = 100.90
c = 71.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-12-27
  • Released Date: 1996-11-08
  • Deposition author(s): Weber, P.C., Lee, S.L., Lewandowski, F.A., Schadt, M.C., Chang, C.H., Kettner, C.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4